This study investigated the impact of Covid-19 pandemic on the organization of school sports programmes among secondary schools in Ilorin Metropolis, Kwara State. Descriptive research design of survey type was used. The population for this study comprises of sports officers and school athletes within the study area. Stratified and purposive sampling techniques were used to select 150 respondents. A researcher structured questionnaire was employed for this study. The instrument was validated by three (3) lecturers in the department of Human Kinetics Education, University of Ilorin. The reliability level of the instrument was established through test-retest method using Pearson Product Moment Correlation (PPMC). A Correlation Coefficient of 0.85r was obtained. The data collected were analysed using inferential statistics of chi-square (x²) to test the postulated hypotheses set for the study at 0.05 alpha level. The result revealed that suspension of sporting activities and the lost of interest in sports have significant influence on the organization of annual school sports programmes. Based on the findings, the study recommends that, there is need for sports officers in schools to sensitize the Ministry of Education through the principal to allow schools to organize school sports competitions following the Covid-19 laid down protocols. This would arouse the student’s athletes interest and build their confidence to participate in sporting activities.